Package index • galah

Getting started

galah_call() request_data() request_metadata() request_files(): Start building a query

galah_config(): Get or set configuration options that control galah behaviour

show_all() show_all_apis() show_all_assertions() show_all_atlases() show_all_collections() show_all_datasets() show_all_fields() show_all_licences() show_all_lists() show_all_profiles() show_all_providers() show_all_ranks() show_all_reasons() stable: Show valid record information

search_all() search_assertions() search_apis() search_atlases() search_collections() search_datasets() search_fields() search_identifiers() search_licences() search_lists() search_profiles() search_providers() search_ranks() search_reasons() search_taxa() stable: Search for record information

show_values() search_values(): Show or search for values within a specified field

Amend a query

apply_profile() galah_apply_profile(): Apply a data quality profile

arrange(<data_request>) arrange(<metadata_request>) experimental: Order rows using column values

count(<data_request>): Count the observations in each group

desc() unnest(): Non-generic tidyverse functions

filter(<data_request>) filter(<metadata_request>) filter(<files_request>) galah_filter(): Keep rows that match a condition

geolocate() galah_geolocate() galah_polygon() galah_bbox() galah_radius() st_crop(<data_request>) experimental: Narrow a query to within a specified area

group_by(<data_request>) galah_group_by(): Group by one or more variables

identify(<data_request>) identify(<metadata_request>) galah_identify(): Narrow a query by passing taxonomic identifiers

select(<data_request>) galah_select(): Keep or drop columns using their names

slice_head(<data_request>) slice_head(<metadata_request>) experimental: Subset rows using their positions

reexports arrange collect compute collapse identify filter select group_by slice_head count st_crop: Objects exported from other packages

Execute a query via API

collapse(<data_request>) collapse(<metadata_request>) collapse(<files_request>): Generate a query

compute(<data_request>) compute(<metadata_request>) compute(<files_request>) compute(<query>): Compute a query

collect(<data_request>) collect(<metadata_request>) collect(<files_request>) collect(<query>) collect(<computed_query>): Retrieve a database query

atlas_occurrences() atlas_counts() atlas_species() atlas_media() atlas_taxonomy(): Retrieve a database query

collect_media(): Collect media files

Miscellaneous functions

taxonomic_searches: Look up taxon information

print(<data_request>) print(<files_request>) print(<metadata_request>) print(<query>) print(<computed_query>) print(<query_set>) print(<galah_config>): Print galah objects

read_zip() experimental: Read downloaded data from a zip file

atlas_citation(): Generate a citation for occurrence data