Deprecated functions

Use galah_identify() instead of select_taxa().

Use galah_select() instead of select_columns().

Use galah_filter() instead of select_filters().

Use galah_geolocate() instead of select_locations().

Use atlas_occurrences() instead of ala_occurrences().

Use atlas_counts() instead of ala_counts().

Use atlas_species() instead of ala_species().

Use atlas_taxonomy() instead of ala_taxonomy().

Use atlas_media() instead of ala_media().

Use atlas_citation() instead of ala_citation().

Use show_all_reasons() instead of find_reasons().

Use show_all_cached_files() instead of find_cached_files().

Use show_all_ranks() instead of find_ranks().

Use show_all_profiles() instead of find_profiles().

Use show_all_atlases() instead of find_atlases().

Use galah_config() instead of ala_config().

Use show_values() instead of search_field_values()

Use show_values() instead of search_profile_attributes()

Usage

select_taxa(query, is_id = FALSE)

select_columns(..., group)

select_filters(..., profile = NULL)

select_locations(query)

ala_occurrences(
  taxa = NULL,
  filters = NULL,
  locations = NULL,
  columns = select_columns(group = "basic"),
  mint_doi = FALSE,
  doi = NULL,
  refresh_cache = FALSE
)

ala_counts(
  taxa = NULL,
  filters = NULL,
  locations = NULL,
  limit = 100,
  type = c("record", "species"),
  refresh_cache = FALSE
)

ala_species(
  taxa = NULL,
  filters = NULL,
  locations = NULL,
  refresh_cache = FALSE
)

ala_taxonomy(taxa, down_to)

ala_media(
  taxa = NULL,
  filters = NULL,
  locations = NULL,
  columns = select_columns(group = "basic"),
  download_dir,
  refresh_cache = FALSE
)

ala_citation(data)

find_reasons()

find_cached_files()

find_ranks()

find_profiles()

find_atlases()

ala_config(..., profile_path = NULL)

search_field_values(field)

search_profile_attributes(profile)

Arguments

query

A vector of taxonomic names (for select_taxa()) or a valid well-known text string (for select_locations()).

is_id

Logical: Does the information provided in query consist of taxonomic identifiers (TRUE), or taxonomic names (FALSE, the default).

...

Queries consisting of field names (for select_columns()) or equations (for select_filters()).

group

optional; the name of a group of columns to include. See galah_select() for details.

profile

String: The name of a valid ALA profile.

taxa

A tibble created with galah_identify()

filters

A tibble created with galah_filter()

locations

A tibble created with galah_geolocate()

columns

A tibble created with galah_select()

mint_doi

Logical: Should a DOI be created for this download? Defaults to FALSE.

doi

String: Optional ALA DOI to download

refresh_cache

Logical: Should the data be re-downloaded to the cache? Defaults to FALSE.

limit

Integer: How many records should be downloaded? Defaults to 100.

type

String: Should counts be made of the number of "records" (default) or "species"?

down_to

A tibble created with galah_down_to()

download_dir

Path to a directory in which to place media files

data

A tibble returned by ala_occurrences()

profile_path

Optional path to profile information

field

String: A valid field for which to display entries.

Value

All deprecated functions return a tibble.