Download Data#

The atlas_ functions are used to return data from the atlas chosen using galah_config(). They are:

  • atlas_counts()

  • atlas_occurrences()

  • atlas_species()

  • atlas_media()

Record counts#

galah.atlas_counts() provides summary counts on records in the specified atlas, without needing to download all the records.

>>> galah.galah_config(atlas="Australia")
>>> galah.atlas_counts()
   totalRecords
0     181071285

In addition to filters arguments, galah.atlas_counts() has an optional group_by argument, which provides counts grouped by the requested field.

>>> galah.atlas_counts(group_by="kingdom")
     kingdom      count
0   Animalia  144482409
1    Archaea      15109
2   Bacteria     458470
3  Chromista    1070297
4      Fungi    1986529
5    Plantae   31467065
6   Protista     482338
7    Viruses      13782

Species lists#

A common use case of atlas data is to identify which species occur in a specified region, time period, or taxonomic group. galah.atlas_species() is similar to search_taxa, in that it returns taxonomic information and unique identifiers in a dataframe. It differs in not being able to return information on taxonomic levels other than the species; but also in being more flexible by supporting filtering:

>>> galah.atlas_species(taxa="Rodentia",filters="stateProvince=Northern Territory")
                                                                      Species                 Species Name    Scientific Name Authorship Taxon Rank   Kingdom    Phylum     Class     Order    Family         Genus              Vernacular Name
0   https://biodiversity.org.au/afd/taxa/07c52a7f-f529-4137-b41f-3052aeca60b5              Zyzomys argurus                (Thomas, 1889)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Zyzomys              Common Rock-rat
1   https://biodiversity.org.au/afd/taxa/c1063f9b-5a3b-4dc4-a430-6568b5088579               Notomys alexis                  Thomas, 1922    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Notomys       Spinifex Hopping-mouse
2   https://biodiversity.org.au/afd/taxa/4797cf4c-db5c-48d6-9524-3330cb78cfda         Mesembriomys gouldii             (J.E. Gray, 1843)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae  Mesembriomys        Black-footed Tree-rat
3   https://biodiversity.org.au/afd/taxa/b6045bad-6c5e-46ba-8644-15c0bd6320bb        Pseudomys delicatulus                 (Gould, 1842)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Pseudomys               Delicate Mouse
4   https://biodiversity.org.au/afd/taxa/c7a6c8d8-ab20-456e-bc9c-538720409b70  Pseudomys hermannsburgensis                 (Waite, 1896)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Pseudomys           Sandy Inland Mouse
5   https://biodiversity.org.au/afd/taxa/5b6226c0-b579-4d59-8d66-f23bd328b9dd              Melomys burtoni                (Ramsay, 1887)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Melomys            Grassland Melomys
6   https://biodiversity.org.au/afd/taxa/90c13414-5069-4125-8b56-0b5c59a752e3         Zyzomys pedunculatus                 (Waite, 1896)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Zyzomys             Central Rock-rat
7   https://biodiversity.org.au/afd/taxa/0a444981-cf13-484c-81b5-9313d5851c4e                 Mus musculus                Linnaeus, 1758    species  Animalia  Chordata  Mammalia  Rodentia   Muridae           Mus                  House Mouse
8   https://biodiversity.org.au/afd/taxa/9bb1445f-39e4-417e-b384-60a277447a4a       Conilurus penicillatus                 (Gould, 1842)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Conilurus        Brush-tailed Tree-rat
9   https://biodiversity.org.au/afd/taxa/575ddf45-3127-4e8f-bb75-efdd6468a571                Rattus rattus              (Linnaeus, 1758)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae        Rattus                    Black Rat
10  https://biodiversity.org.au/afd/taxa/958c426a-21be-4389-84c5-9c227a0ce8a6               Rattus tunneyi                (Thomas, 1904)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae        Rattus               Pale Field-rat
11  https://biodiversity.org.au/afd/taxa/e7703da0-c258-413b-8578-e2dfade1591f           Pseudomys desertor               Troughton, 1932    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Pseudomys                 Desert Mouse
12  https://biodiversity.org.au/afd/taxa/93b9afae-579d-4181-9fae-501230f0b0d8              Pseudomys nanus                 (Gould, 1858)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Pseudomys       Western Chestnut Mouse
13  https://biodiversity.org.au/afd/taxa/5733f8c9-38f9-4a17-a2ee-f793fa70ed98         Rattus villosissimus                 (Waite, 1898)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae        Rattus              Long-haired Rat
14  https://biodiversity.org.au/afd/taxa/4e9a6d73-a015-4aea-948c-8fc3eae46c1c              Rattus colletti                (Thomas, 1904)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae        Rattus                    Dusky Rat
15  https://biodiversity.org.au/afd/taxa/dab6e02d-b4a5-4009-81ea-14b9f139b910                Zyzomys maini               Kitchener, 1989    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Zyzomys         Arnhem Land Rock-rat
16  https://biodiversity.org.au/afd/taxa/7f791f55-1d6f-4448-91a0-996daa72081c        Hydromys chrysogaster                Geoffroy, 1804    species  Animalia  Chordata  Mammalia  Rodentia   Muridae      Hydromys                    Water-rat
17  https://biodiversity.org.au/afd/taxa/cc2d4c74-8072-487e-a47f-9747806dc34a      Leggadina lakedownensis                   Watts, 1976    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Leggadina         Lakeland Downs Mouse
18  https://biodiversity.org.au/afd/taxa/2595dcfd-30f7-48f6-a50e-af3551bd9cc8            Zyzomys palatalis               Kitchener, 1989    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Zyzomys        Carpentarian Rock-rat
19  https://biodiversity.org.au/afd/taxa/e985914e-3435-4f6b-9978-2cbb19d29fee          Pseudomys australis               J.E. Gray, 1832    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Pseudomys                   Plains Rat
20  https://biodiversity.org.au/afd/taxa/4b5e599e-70af-40a6-b4bb-13cfdb98c23f           Leggadina forresti                (Thomas, 1906)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Leggadina              Forrest's Mouse
21  https://biodiversity.org.au/afd/taxa/b5981535-b6c0-41e3-b573-9e383b91a9a4               Notomys aquilo                  Thomas, 1921    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Notomys       Northern Hopping-mouse
22  https://biodiversity.org.au/afd/taxa/f44806fd-7802-45d7-bb10-774ecc577c7d           Pseudomys johnsoni               Kitchener, 1985    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Pseudomys   Central Pebble-mound Mouse
23  https://biodiversity.org.au/afd/taxa/e59c9613-14d2-4d2f-8b19-3b165a6ed11e            Pseudomys calabyi   Kitchener & Humphreys, 1987    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Pseudomys    Kakadu Pebble-mound Mouse
24  https://biodiversity.org.au/afd/taxa/356745c1-ce6d-42f1-935c-9098261cd81f            Pseudomys mimulus                  Thomas, 1926    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Pseudomys                          NaN
25  https://biodiversity.org.au/afd/taxa/ff0f2d1f-3abf-4288-8365-ee6c6be17b38              Rattus sordidus                 (Gould, 1858)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae        Rattus                Canefield Rat
26  https://biodiversity.org.au/afd/taxa/66b0dc84-12dd-4aca-a7b8-82d1ae89bc18        Notomys longicaudatus                 (Gould, 1844)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Notomys    Long-tailed Hopping-mouse
27  https://biodiversity.org.au/afd/taxa/9daf14f2-931d-44a6-8537-5127c56ab950          Leporillus apicalis                 (Gould, 1853)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae    Leporillus        Lesser Stick-nest Rat
28  https://biodiversity.org.au/afd/taxa/2da4cbaa-005f-4346-8e11-6a1e5ddd0444               Notomys amplus                Brazenor, 1936    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Notomys   Short-tailed Hopping-mouse
29  https://biodiversity.org.au/afd/taxa/77c6c9f3-40d3-48da-96f5-d80e402ad18d             Notomys cervinus                 (Gould, 1853)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Notomys           Fawn Hopping-mouse
30  https://biodiversity.org.au/afd/taxa/c4bfec0f-0137-49a1-84bb-c088e99844b8           Notomys mitchellii                (Ogilby, 1838)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Notomys     Mitchell's Hopping-mouse
31  https://biodiversity.org.au/afd/taxa/b042c17d-27fd-4154-8bdf-519aeb952836              Xeromys myoides                  Thomas, 1889    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Xeromys              False Water-rat
32  https://biodiversity.org.au/afd/taxa/c0e8f4ca-3c7e-4b71-9d8f-992e3e3b07b9               Notomys fuscus                 (Jones, 1925)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Notomys          Dusky Hopping-mouse
33  https://biodiversity.org.au/afd/taxa/f6168080-2649-4d2e-ad43-5b852bc5913d    Pseudomys gracilicaudatus                 (Gould, 1845)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Pseudomys       Eastern Chestnut Mouse
34  https://biodiversity.org.au/afd/taxa/3694beb2-9b22-4e79-9373-5d0d887be69b        Mesembriomys macrurus                (Peters, 1876)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae  Mesembriomys       Golden-backed Tree-rat
35  https://biodiversity.org.au/afd/taxa/e5b3ef22-25f4-48f6-95f2-2bd384b8efe7            Rattus norvegicus            (Berkenhout, 1769)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae        Rattus                    Brown Rat
36  https://biodiversity.org.au/afd/taxa/59b21252-19fe-4fc3-85d4-ddb6a7e49e78           Melomys cervinipes                 (Gould, 1852)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Melomys          Fawn-footed Melomys
37  https://biodiversity.org.au/afd/taxa/2eef1990-96e3-498a-887a-f1dfa334b218              Rattus leucopus             (J.E. Gray, 1867)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae        Rattus                Cape York Rat
38  https://biodiversity.org.au/afd/taxa/b9b253e9-a56c-4a72-8ce3-15de06ef8417            Pseudomys gouldii            (Waterhouse, 1839)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Pseudomys  Shark Bay Mouse (djoongari)
39  https://biodiversity.org.au/afd/taxa/cce5d053-414a-40e0-87bd-ab8012287068          Leporillus conditor                 (Sturt, 1848)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae    Leporillus       Greater Stick-nest Rat
40  https://biodiversity.org.au/afd/taxa/91a0d84f-4ce9-4009-9dc7-ee7057f1f57c        Pseudomys pilbarensis  Roycroft, Breed & Ford, 2024    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Pseudomys       Western Delicate Mouse
41                                                             ALA_DR30477_78              Cavia porcellus                           NaN    species  Animalia  Chordata  Mammalia  Rodentia  Caviidae         Cavia                   Guinea Pig
42  https://biodiversity.org.au/afd/taxa/35a0671a-e449-4581-aeac-510ea2f251ea            Zyzomys woodwardi                (Thomas, 1909)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Zyzomys           Kimberley Rock-rat
43  https://biodiversity.org.au/afd/taxa/3b31abbc-6b8a-4fbf-aed6-f614dbb51cb8             Rattus lutreolus             (J.E. Gray, 1841)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae        Rattus                    Swamp Rat
44  https://biodiversity.org.au/afd/taxa/83049628-f180-4a3f-9f48-af5cee08d818       Pseudomys occidentalis                    Tate, 1951    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Pseudomys                Western Mouse
45  https://biodiversity.org.au/afd/taxa/0058f9b2-a9c1-49a2-811b-9b2efcc8e279    Pseudomys novaehollandiae            (Waterhouse, 1843)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Pseudomys            New Holland Mouse
46  https://biodiversity.org.au/afd/taxa/07e98c03-3739-4779-bfbd-ae4d930dad7a        Uromys caudimaculatus                (Krefft, 1867)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae        Uromys          White-tailed Uromys
47  https://biodiversity.org.au/afd/taxa/6a5c25e0-3b06-4ae2-8069-b4c1350c4365            Mastacomys fuscus                  Thomas, 1882    species  Animalia  Chordata  Mammalia  Rodentia   Muridae    Mastacomys            Broad-toothed Rat

Occurrence data#

To download occurrence data you will need to specify your email in galah.galah_config(). This email must be associated with an active account on your chosen atlas. See more information in the config section.

>>> galah_config(email = "your_email@email.com", atlas = "Australia")

After specifying your email, you can download occurrence records of, for example, Eolophus roseicapilla:

>>> galah.atlas_occurrences(taxa="Eolophus roseicapilla",filters=["stateProvince=Australian Capital Territory","year>=2010"],fields=["institutionID","basic"])
       institutionID  decimalLatitude  decimalLongitude             eventDate                  scientificName                                                             taxonConceptID                              recordID                   dataResourceName occurrenceStatus
0                NaN       -35.196110        149.005830  2013-01-10T00:00:00Z  Eolophus roseicapilla albiceps  https://biodiversity.org.au/afd/taxa/a38ac5ac-3049-4fde-8391-faf8bf7aeb7f  64b0bfdf-a85d-49e0-a81e-5cdc38f3579b        BirdLife Australia, Birdata          PRESENT
1                NaN       -35.317036        149.079250  2020-05-23T16:04:00Z           Eolophus roseicapilla  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea  759717d4-8178-4e3d-94fd-518767168b60                    eBird Australia          PRESENT
2                NaN       -35.299753        149.115322  2022-11-21T14:24:00Z           Eolophus roseicapilla  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea  f2ee12b8-957a-4aa2-ae8e-66a47694ee28                    eBird Australia          PRESENT
3                NaN       -35.605580        148.953340  2015-12-06T11:00:00Z           Eolophus roseicapilla  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea  d644275f-9ac7-4863-b625-d37d391528d0                    eBird Australia           ABSENT
4                NaN       -35.242780        149.020830  2011-11-01T00:00:00Z  Eolophus roseicapilla albiceps  https://biodiversity.org.au/afd/taxa/a38ac5ac-3049-4fde-8391-faf8bf7aeb7f  18952e22-a082-49b2-8c5f-58a9e70e8476        BirdLife Australia, Birdata          PRESENT
...              ...              ...               ...                   ...                             ...                                                                        ...                                   ...                                ...              ...
113480        in1033       -35.341263        149.091202  2013-06-23T02:00:00Z           Eolophus roseicapilla  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea  1039e81d-c4a1-448e-abc9-59388f40dbe7  ALA species sightings and OzAtlas          PRESENT
113481        in1033       -35.751461        148.964401  2015-01-06T02:55:00Z           Eolophus roseicapilla  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea  326e6431-6ea5-45a8-82dd-53ad9ad85a9b  ALA species sightings and OzAtlas          PRESENT
113482        in1033       -35.226993        149.020481  2017-06-25T14:00:00Z           Eolophus roseicapilla  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea  32735c4a-bb78-4ffe-b7c1-7a7b7cc599ce  ALA species sightings and OzAtlas          PRESENT
113483        in1033       -35.276619        149.112914  2017-07-25T21:34:37Z           Eolophus roseicapilla  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea  150d3252-111e-41ec-ab32-7f0567ac0330  ALA species sightings and OzAtlas          PRESENT
113484         in550       -35.322672        149.092483  2021-02-16T00:00:00Z           Eolophus roseicapilla  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea  738123d4-dd65-4fe8-b449-796598a2233a       Entangled Wildlife Australia          PRESENT

[113485 rows x 9 columns]

Media metadata#

In addition to text data describing individual occurrences and their attributes, ALA stores images, sounds and videos associated with a given record. Metadata on these records can be downloaded using galah.atlas_media() and the same set of filters as the other data download functions.

>>> galah.atlas_media(taxa="Eolophus roseicapilla",filters=["year=2020","stateProvince=Australian Capital Territory"])
     decimalLatitude  decimalLongitude             eventDate         scientificName                                                             taxonConceptID                              recordID             dataResourceName occurrenceStatus multimedia                                images  videos  sounds               creator                                         license    mimeType  width  height                                                                               imageUrl
0         -35.327922        149.102528  2020-08-30T07:08:00Z  Eolophus roseicapilla  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea  89b44608-edbc-450e-aea5-c68b2b84a804                   NatureMapr          PRESENT      Image  9e68c004-118c-4b37-b945-e19b81662051     NaN     NaN                                                                        image/jpeg   1920    2877  https://images.ala.org.au/store/1/5/0/2/9e68c004-118c-4b37-b945-e19b81662051/original
1         -35.317800        149.146261  2020-01-06T12:00:00Z  Eolophus roseicapilla  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea  b03e670c-29d4-44e4-b0b4-d698b7a00581  Earth Guardians Weekly Feed          PRESENT      Image  3e220765-bdec-4804-8015-4763e3b36bb3     NaN     NaN                                                                        image/jpeg   1001     750  https://images.ala.org.au/store/3/b/b/6/3e220765-bdec-4804-8015-4763e3b36bb3/original
2         -35.317737        149.161550  2020-05-01T13:40:00Z  Eolophus roseicapilla  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea  ca1f9727-9d8e-4e79-b92c-d10e285b2c15        iNaturalist Australia          PRESENT      Image  7b95197f-2520-4167-980a-7b8dfc395952     NaN     NaN               deborod  http://creativecommons.org/licenses/by-nc/4.0/  image/jpeg   1800    1200  https://images.ala.org.au/store/2/5/9/5/7b95197f-2520-4167-980a-7b8dfc395952/original
3         -35.316870        149.160586  2020-07-20T14:28:00Z  Eolophus roseicapilla  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea  4426ea86-f5f3-4c92-97fb-9f6afc25e1c5        iNaturalist Australia          PRESENT      Image  f84a964a-0eb8-4eb5-9c67-e5bcd50e0d64     NaN     NaN               deborod  http://creativecommons.org/licenses/by-nc/4.0/  image/jpeg   1800    1200  https://images.ala.org.au/store/4/6/d/0/f84a964a-0eb8-4eb5-9c67-e5bcd50e0d64/original
4         -35.316857        149.162818  2020-10-23T10:51:00Z  Eolophus roseicapilla  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea  e0c904f7-ad62-46da-973e-f948bd36d8f5        iNaturalist Australia          PRESENT      Image  cb82294a-cd01-4ca5-b841-5d6f6f853d2f     NaN     NaN               deborod  http://creativecommons.org/licenses/by-nc/4.0/  image/jpeg   1800    1200  https://images.ala.org.au/store/f/2/d/3/cb82294a-cd01-4ca5-b841-5d6f6f853d2f/original
..               ...               ...                   ...                    ...                                                                        ...                                   ...                          ...              ...        ...                                   ...     ...     ...                   ...                                             ...         ...    ...     ...                                                                                    ...
128       -35.407152        149.128183  2020-03-31T14:07:00Z  Eolophus roseicapilla  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea  e6d0fb25-2aa8-48ff-8d97-e096b4e191ac        iNaturalist Australia          PRESENT      Image  45104753-89bc-4e62-a430-1145efa13788     NaN     NaN               deborod  http://creativecommons.org/licenses/by-nc/4.0/  image/jpeg   1800    1200  https://images.ala.org.au/store/8/8/7/3/45104753-89bc-4e62-a430-1145efa13788/original
129       -35.407145        149.128423  2020-05-08T16:56:00Z  Eolophus roseicapilla  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea  373cb486-bc70-4ac0-9818-e4966b88518e        iNaturalist Australia          PRESENT      Image  3adab649-e9fa-4dac-b40e-cde5d44e34c6     NaN     NaN               deborod  http://creativecommons.org/licenses/by-nc/4.0/  image/jpeg   1800    1200  https://images.ala.org.au/store/6/c/4/3/3adab649-e9fa-4dac-b40e-cde5d44e34c6/original
130       -35.529228        149.078437  2020-04-28T14:26:00Z  Eolophus roseicapilla  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea  383dc9f1-ef24-43f9-a4eb-6e93f3d1f9b4        iNaturalist Australia          PRESENT      Image  583ef5f9-956e-43a3-8d36-e69291ae3aea     NaN     NaN               deborod  http://creativecommons.org/licenses/by-nc/4.0/  image/jpeg   1800    1200  https://images.ala.org.au/store/a/e/a/3/583ef5f9-956e-43a3-8d36-e69291ae3aea/original
131       -35.390885        149.065395  2020-05-19T00:00:00Z  Eolophus roseicapilla  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea  167578a6-9fd8-4642-8b4b-ce0419d4be2d        iNaturalist Australia          PRESENT      Image  f5ade747-668a-4fc0-a23b-6bb8f30ea02a     NaN     NaN  Namadgi Y7 Ms Boadle  http://creativecommons.org/licenses/by-nc/4.0/  image/jpeg   1536    2048  https://images.ala.org.au/store/a/2/0/a/f5ade747-668a-4fc0-a23b-6bb8f30ea02a/original
132       -35.532558        149.062855  2020-08-26T11:53:00Z  Eolophus roseicapilla  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea  28684160-f9eb-42b2-8491-b99d36528d77        iNaturalist Australia          PRESENT      Image  1295c202-f7d2-4030-ad4b-339e6eb110a7     NaN     NaN               deborod  http://creativecommons.org/licenses/by-nc/4.0/  image/jpeg   1800    1200  https://images.ala.org.au/store/7/a/0/1/1295c202-f7d2-4030-ad4b-339e6eb110a7/original

[133 rows x 18 columns]

To actually download the media files to your computer, add the argument collect. By default, it downloads the data to your current working directory, but you can specify the folder to download to with the path argument.

Configuring galah#

Various aspects of the galah package can be customized.

Email

To download occurrence records, you will need to provide an email address registered with the ALA. You can create an account here. Once an email is registered with the ALA, it should be stored in the config:

>>> galah.galah_config(email = "myemail@gmail.com")

Setting a download reason

ALA requires that you provide a reason when downloading occurrence data (via the galah.atlas_occurrences() function). The reason is set to 4 (scientific research) by default, but you can change this using galah_config(). See galah.show_all(reasons=True) for valid download reasons.

>>> galah.galah_config(reason = 5)

Debugging#

If things aren’t working as expected, more detail (particularly about web requests) can be obtained by setting the verbose option in many functions.