Download Data#

The atlas_ functions are used to return data from the atlas chosen using galah_config(). They are:

  • atlas_counts()

  • atlas_occurrences()

  • atlas_species()

  • atlas_media()

Record counts#

galah.atlas_counts() provides summary counts on records in the specified atlas, without needing to download all the records.

>>> galah.galah_config(atlas="Australia")
>>> galah.atlas_counts()
   totalRecords
0     183573512

In addition to filters arguments, galah.atlas_counts() has an optional group_by argument, which provides counts grouped by the requested field.

>>> galah.atlas_counts(group_by="kingdom")
     kingdom      count
0   Animalia  145767827
1    Archaea      15110
2   Bacteria     458888
3  Chromista    1073678
4      Fungi    2112605
5    Plantae   32549294
6   Protista     484953
7    Viruses      13806

Species lists#

A common use case of atlas data is to identify which species occur in a specified region, time period, or taxonomic group. galah.atlas_species() is similar to search_taxa, in that it returns taxonomic information and unique identifiers in a dataframe. It differs in not being able to return information on taxonomic levels other than the species; but also in being more flexible by supporting filtering:

>>> galah.atlas_species(taxa="Rodentia",filters="stateProvince=Northern Territory")
                                                                      Species                 Species Name    Scientific Name Authorship Taxon Rank   Kingdom    Phylum     Class     Order    Family         Genus              Vernacular Name
0   https://biodiversity.org.au/afd/taxa/07c52a7f-f529-4137-b41f-3052aeca60b5              Zyzomys argurus                (Thomas, 1889)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Zyzomys              Common Rock-rat
1   https://biodiversity.org.au/afd/taxa/c1063f9b-5a3b-4dc4-a430-6568b5088579               Notomys alexis                  Thomas, 1922    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Notomys       Spinifex Hopping-mouse
2   https://biodiversity.org.au/afd/taxa/4797cf4c-db5c-48d6-9524-3330cb78cfda         Mesembriomys gouldii             (J.E. Gray, 1843)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae  Mesembriomys        Black-footed Tree-rat
3   https://biodiversity.org.au/afd/taxa/b6045bad-6c5e-46ba-8644-15c0bd6320bb        Pseudomys delicatulus                 (Gould, 1842)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Pseudomys               Delicate Mouse
4   https://biodiversity.org.au/afd/taxa/c7a6c8d8-ab20-456e-bc9c-538720409b70  Pseudomys hermannsburgensis                 (Waite, 1896)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Pseudomys           Sandy Inland Mouse
5   https://biodiversity.org.au/afd/taxa/5b6226c0-b579-4d59-8d66-f23bd328b9dd              Melomys burtoni                (Ramsay, 1887)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Melomys            Grassland Melomys
6   https://biodiversity.org.au/afd/taxa/90c13414-5069-4125-8b56-0b5c59a752e3         Zyzomys pedunculatus                 (Waite, 1896)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Zyzomys             Central Rock-rat
7   https://biodiversity.org.au/afd/taxa/0a444981-cf13-484c-81b5-9313d5851c4e                 Mus musculus                Linnaeus, 1758    species  Animalia  Chordata  Mammalia  Rodentia   Muridae           Mus                  House Mouse
8   https://biodiversity.org.au/afd/taxa/9bb1445f-39e4-417e-b384-60a277447a4a       Conilurus penicillatus                 (Gould, 1842)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Conilurus        Brush-tailed Tree-rat
9   https://biodiversity.org.au/afd/taxa/575ddf45-3127-4e8f-bb75-efdd6468a571                Rattus rattus              (Linnaeus, 1758)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae        Rattus                    Black Rat
10  https://biodiversity.org.au/afd/taxa/958c426a-21be-4389-84c5-9c227a0ce8a6               Rattus tunneyi                (Thomas, 1904)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae        Rattus               Pale Field-rat
11  https://biodiversity.org.au/afd/taxa/e7703da0-c258-413b-8578-e2dfade1591f           Pseudomys desertor               Troughton, 1932    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Pseudomys                 Desert Mouse
12  https://biodiversity.org.au/afd/taxa/93b9afae-579d-4181-9fae-501230f0b0d8              Pseudomys nanus                 (Gould, 1858)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Pseudomys       Western Chestnut Mouse
13  https://biodiversity.org.au/afd/taxa/5733f8c9-38f9-4a17-a2ee-f793fa70ed98         Rattus villosissimus                 (Waite, 1898)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae        Rattus              Long-haired Rat
14  https://biodiversity.org.au/afd/taxa/4e9a6d73-a015-4aea-948c-8fc3eae46c1c              Rattus colletti                (Thomas, 1904)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae        Rattus                    Dusky Rat
15  https://biodiversity.org.au/afd/taxa/dab6e02d-b4a5-4009-81ea-14b9f139b910                Zyzomys maini               Kitchener, 1989    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Zyzomys         Arnhem Land Rock-rat
16  https://biodiversity.org.au/afd/taxa/7f791f55-1d6f-4448-91a0-996daa72081c        Hydromys chrysogaster                Geoffroy, 1804    species  Animalia  Chordata  Mammalia  Rodentia   Muridae      Hydromys                    Water-rat
17  https://biodiversity.org.au/afd/taxa/cc2d4c74-8072-487e-a47f-9747806dc34a      Leggadina lakedownensis                   Watts, 1976    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Leggadina         Lakeland Downs Mouse
18  https://biodiversity.org.au/afd/taxa/2595dcfd-30f7-48f6-a50e-af3551bd9cc8            Zyzomys palatalis               Kitchener, 1989    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Zyzomys        Carpentarian Rock-rat
19  https://biodiversity.org.au/afd/taxa/e985914e-3435-4f6b-9978-2cbb19d29fee          Pseudomys australis               J.E. Gray, 1832    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Pseudomys                   Plains Rat
20  https://biodiversity.org.au/afd/taxa/4b5e599e-70af-40a6-b4bb-13cfdb98c23f           Leggadina forresti                (Thomas, 1906)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Leggadina              Forrest's Mouse
21  https://biodiversity.org.au/afd/taxa/b5981535-b6c0-41e3-b573-9e383b91a9a4               Notomys aquilo                  Thomas, 1921    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Notomys       Northern Hopping-mouse
22  https://biodiversity.org.au/afd/taxa/f44806fd-7802-45d7-bb10-774ecc577c7d           Pseudomys johnsoni               Kitchener, 1985    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Pseudomys   Central Pebble-mound Mouse
23  https://biodiversity.org.au/afd/taxa/e59c9613-14d2-4d2f-8b19-3b165a6ed11e            Pseudomys calabyi   Kitchener & Humphreys, 1987    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Pseudomys    Kakadu Pebble-mound Mouse
24  https://biodiversity.org.au/afd/taxa/356745c1-ce6d-42f1-935c-9098261cd81f            Pseudomys mimulus                  Thomas, 1926    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Pseudomys                          NaN
25  https://biodiversity.org.au/afd/taxa/ff0f2d1f-3abf-4288-8365-ee6c6be17b38              Rattus sordidus                 (Gould, 1858)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae        Rattus                Canefield Rat
26  https://biodiversity.org.au/afd/taxa/66b0dc84-12dd-4aca-a7b8-82d1ae89bc18        Notomys longicaudatus                 (Gould, 1844)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Notomys    Long-tailed Hopping-mouse
27  https://biodiversity.org.au/afd/taxa/9daf14f2-931d-44a6-8537-5127c56ab950          Leporillus apicalis                 (Gould, 1853)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae    Leporillus        Lesser Stick-nest Rat
28  https://biodiversity.org.au/afd/taxa/2da4cbaa-005f-4346-8e11-6a1e5ddd0444               Notomys amplus                Brazenor, 1936    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Notomys   Short-tailed Hopping-mouse
29  https://biodiversity.org.au/afd/taxa/77c6c9f3-40d3-48da-96f5-d80e402ad18d             Notomys cervinus                 (Gould, 1853)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Notomys           Fawn Hopping-mouse
30  https://biodiversity.org.au/afd/taxa/c4bfec0f-0137-49a1-84bb-c088e99844b8           Notomys mitchellii                (Ogilby, 1838)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Notomys     Mitchell's Hopping-mouse
31  https://biodiversity.org.au/afd/taxa/c0e8f4ca-3c7e-4b71-9d8f-992e3e3b07b9               Notomys fuscus                 (Jones, 1925)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Notomys          Dusky Hopping-mouse
32  https://biodiversity.org.au/afd/taxa/b042c17d-27fd-4154-8bdf-519aeb952836              Xeromys myoides                  Thomas, 1889    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Xeromys              False Water-rat
33  https://biodiversity.org.au/afd/taxa/f6168080-2649-4d2e-ad43-5b852bc5913d    Pseudomys gracilicaudatus                 (Gould, 1845)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Pseudomys       Eastern Chestnut Mouse
34  https://biodiversity.org.au/afd/taxa/3694beb2-9b22-4e79-9373-5d0d887be69b        Mesembriomys macrurus                (Peters, 1876)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae  Mesembriomys       Golden-backed Tree-rat
35  https://biodiversity.org.au/afd/taxa/e5b3ef22-25f4-48f6-95f2-2bd384b8efe7            Rattus norvegicus            (Berkenhout, 1769)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae        Rattus                    Brown Rat
36  https://biodiversity.org.au/afd/taxa/59b21252-19fe-4fc3-85d4-ddb6a7e49e78           Melomys cervinipes                 (Gould, 1852)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Melomys          Fawn-footed Melomys
37  https://biodiversity.org.au/afd/taxa/2eef1990-96e3-498a-887a-f1dfa334b218              Rattus leucopus             (J.E. Gray, 1867)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae        Rattus                Cape York Rat
38  https://biodiversity.org.au/afd/taxa/b9b253e9-a56c-4a72-8ce3-15de06ef8417            Pseudomys gouldii            (Waterhouse, 1839)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Pseudomys  Shark Bay Mouse (djoongari)
39  https://biodiversity.org.au/afd/taxa/cce5d053-414a-40e0-87bd-ab8012287068          Leporillus conditor                 (Sturt, 1848)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae    Leporillus       Greater Stick-nest Rat
40  https://biodiversity.org.au/afd/taxa/91a0d84f-4ce9-4009-9dc7-ee7057f1f57c        Pseudomys pilbarensis  Roycroft, Breed & Ford, 2024    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Pseudomys       Western Delicate Mouse
41                                                             ALA_DR30477_78              Cavia porcellus                           NaN    species  Animalia  Chordata  Mammalia  Rodentia  Caviidae         Cavia                   Guinea Pig
42  https://biodiversity.org.au/afd/taxa/35a0671a-e449-4581-aeac-510ea2f251ea            Zyzomys woodwardi                (Thomas, 1909)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae       Zyzomys           Kimberley Rock-rat
43  https://biodiversity.org.au/afd/taxa/3b31abbc-6b8a-4fbf-aed6-f614dbb51cb8             Rattus lutreolus             (J.E. Gray, 1841)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae        Rattus                    Swamp Rat
44  https://biodiversity.org.au/afd/taxa/83049628-f180-4a3f-9f48-af5cee08d818       Pseudomys occidentalis                    Tate, 1951    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Pseudomys                Western Mouse
45  https://biodiversity.org.au/afd/taxa/0058f9b2-a9c1-49a2-811b-9b2efcc8e279    Pseudomys novaehollandiae            (Waterhouse, 1843)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae     Pseudomys            New Holland Mouse
46  https://biodiversity.org.au/afd/taxa/07e98c03-3739-4779-bfbd-ae4d930dad7a        Uromys caudimaculatus                (Krefft, 1867)    species  Animalia  Chordata  Mammalia  Rodentia   Muridae        Uromys          White-tailed Uromys
47  https://biodiversity.org.au/afd/taxa/6a5c25e0-3b06-4ae2-8069-b4c1350c4365            Mastacomys fuscus                  Thomas, 1882    species  Animalia  Chordata  Mammalia  Rodentia   Muridae    Mastacomys            Broad-toothed Rat

Occurrence data#

To download occurrence data you will need to specify your email in galah.galah_config(). This email must be associated with an active account on your chosen atlas. See more information in the config section.

>>> galah_config(email = "your_email@email.com", atlas = "Australia")

After specifying your email, you can download occurrence records of, for example, Eolophus roseicapilla:

>>> galah.atlas_occurrences(taxa="Eolophus roseicapilla",filters=["stateProvince=Australian Capital Territory","year>=2010"],fields=["institutionID","basic"])
       institutionID                              recordID         scientificName                                                             taxonConceptID  decimalLatitude  decimalLongitude             eventDate                   dataResourceName occurrenceStatus
0                NaN  f2e8061c-cd10-4d38-86e4-02feb724074f  Eolophus roseicapilla  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea       -35.337430        149.098830  2012-08-14T00:00:00Z                Garden Bird Surveys          PRESENT
1                NaN  7d97dffb-fb4b-4a8f-8348-647fbca64a78  Eolophus roseicapilla  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea       -35.398128        149.117480  2016-08-06T08:45:00Z                    eBird Australia          PRESENT
2                NaN  49e6e23d-ff26-453c-a380-268cf24c7595  Eolophus roseicapilla  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea       -35.251810        149.148540  2012-03-17T16:40:00Z                    eBird Australia           ABSENT
3                NaN  6ee19496-9fe0-4a27-8aca-ac79c8cfa804  Eolophus roseicapilla  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea       -35.356359        149.085490  2017-09-18T00:00:00Z                Garden Bird Surveys          PRESENT
4                NaN  3f6f5b1b-2d86-4a38-87c3-c80821c1cabf  Eolophus roseicapilla  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea       -35.251810        149.148540  2023-06-16T11:16:00Z                    eBird Australia          PRESENT
...              ...                                   ...                    ...                                                                        ...              ...               ...                   ...                                ...              ...
113537        in1033  1039e81d-c4a1-448e-abc9-59388f40dbe7  Eolophus roseicapilla  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea       -35.341263        149.091202  2013-06-23T02:00:00Z  ALA species sightings and OzAtlas          PRESENT
113538        in1033  d1f6a033-25ca-4d7a-8b4a-a64f83df902e  Eolophus roseicapilla  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea       -35.345684        149.039413  2013-08-10T06:00:00Z  ALA species sightings and OzAtlas          PRESENT
113539        in1033  ac0ba2ae-f014-40b6-a8d1-121e0417ff32  Eolophus roseicapilla  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea       -35.275249        149.114304  2014-12-16T00:31:00Z  ALA species sightings and OzAtlas          PRESENT
113540        in1033  0a6d58bc-ecbe-4133-9319-33a645c1b5d6  Eolophus roseicapilla  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea       -35.347511        149.044907  2013-08-07T23:57:00Z  ALA species sightings and OzAtlas          PRESENT
113541         in550  738123d4-dd65-4fe8-b449-796598a2233a  Eolophus roseicapilla  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea       -35.322672        149.092483  2021-02-16T00:00:00Z       Entangled Wildlife Australia          PRESENT

[113542 rows x 9 columns]

Media metadata#

In addition to text data describing individual occurrences and their attributes, ALA stores images, sounds and videos associated with a given record. Metadata on these records can be downloaded using galah.atlas_media() and the same set of filters as the other data download functions.

>>> galah.atlas_media(taxa="Eolophus roseicapilla",filters=["year=2020","stateProvince=Australian Capital Territory"])
                                   images                                                             taxonConceptID  sounds  videos multimedia  decimalLatitude             eventDate  decimalLongitude occurrenceStatus                              recordID       dataResourceName         scientificName         creator                                         license    mimeType  width  height                                                                               imageUrl
0    a995ca29-0d03-483a-b51f-c99d1aa3da09  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea     NaN     NaN      Image       -35.326899  2020-11-15T06:10:00Z        149.097609          PRESENT  fd6bd0e2-7b4b-40b9-b6a1-3105ace11ff6             NatureMapr  Eolophus roseicapilla                                                                  image/jpeg   1920    1440  https://images.ala.org.au/store/9/0/a/d/a995ca29-0d03-483a-b51f-c99d1aa3da09/original
1    bc1f6f3a-f4ad-4c10-9e2b-afea28a7a3d9  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea     NaN     NaN      Image       -35.390165  2020-05-09T09:41:00Z        149.161610          PRESENT  0c859342-fd20-48f6-bede-06ec1ccff041  iNaturalist Australia  Eolophus roseicapilla         deborod  http://creativecommons.org/licenses/by-nc/4.0/  image/jpeg   1800    1200  https://images.ala.org.au/store/9/d/3/a/bc1f6f3a-f4ad-4c10-9e2b-afea28a7a3d9/original
2    d7107410-7ffb-436c-8d6a-fb9127694e9d  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea     NaN     NaN      Image       -35.312650  2020-06-12T15:41:00Z        149.162580          PRESENT  d187855b-8521-428f-956b-65ed21185e5e  iNaturalist Australia  Eolophus roseicapilla         deborod  http://creativecommons.org/licenses/by-nc/4.0/  image/jpeg   1800    1200  https://images.ala.org.au/store/d/9/e/4/d7107410-7ffb-436c-8d6a-fb9127694e9d/original
3    61770363-c354-44aa-aebb-05fb05c2d540  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea     NaN     NaN      Image       -35.269395  2020-08-31T15:22:00Z        149.089077          PRESENT  52a8496e-89ff-4c2b-9a59-6581d5170338  iNaturalist Australia  Eolophus roseicapilla  happy_wanderer  http://creativecommons.org/licenses/by-nc/4.0/  image/jpeg   1457    1478  https://images.ala.org.au/store/0/4/5/d/61770363-c354-44aa-aebb-05fb05c2d540/original
4    2841faf3-24ad-48b2-98e0-6da67e74a908  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea     NaN     NaN      Image       -35.407188  2020-03-31T14:03:00Z        149.128284          PRESENT  44c735a7-b771-4a48-9c4e-09b9181893b3  iNaturalist Australia  Eolophus roseicapilla         deborod  http://creativecommons.org/licenses/by-nc/4.0/  image/jpeg   1800    1200  https://images.ala.org.au/store/8/0/9/a/2841faf3-24ad-48b2-98e0-6da67e74a908/original
..                                    ...                                                                        ...     ...     ...        ...              ...                   ...               ...              ...                                   ...                    ...                    ...             ...                                             ...         ...    ...     ...                                                                                    ...
335  016246bf-9e7e-4318-8753-6ddda30f1d40  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea     NaN     NaN      Image       -35.408187  2020-01-17T18:09:00Z        149.131098          PRESENT  2a78518b-7c0f-485b-be6b-61cc877cfd41  iNaturalist Australia  Eolophus roseicapilla         deborod  http://creativecommons.org/licenses/by-nc/4.0/  image/jpeg   1800    1200  https://images.ala.org.au/store/0/4/d/1/016246bf-9e7e-4318-8753-6ddda30f1d40/original
336  3e1598ee-a859-4c63-ac32-9437eabe8a4c  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea     NaN     NaN      Image       -35.408187  2020-01-17T18:09:00Z        149.131098          PRESENT  2a78518b-7c0f-485b-be6b-61cc877cfd41  iNaturalist Australia  Eolophus roseicapilla         deborod  http://creativecommons.org/licenses/by-nc/4.0/  image/jpeg   1800    1200  https://images.ala.org.au/store/c/4/a/8/3e1598ee-a859-4c63-ac32-9437eabe8a4c/original
337  78b0b7f0-b2a4-4646-b59b-4a6d1a91a6f4  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea     NaN     NaN      Image       -35.408187  2020-01-17T18:09:00Z        149.131098          PRESENT  2a78518b-7c0f-485b-be6b-61cc877cfd41  iNaturalist Australia  Eolophus roseicapilla         deborod  http://creativecommons.org/licenses/by-nc/4.0/  image/jpeg   1800    1200  https://images.ala.org.au/store/4/f/6/a/78b0b7f0-b2a4-4646-b59b-4a6d1a91a6f4/original
338  79e5ad3d-dfad-44f7-83ba-b576a91742b7  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea     NaN     NaN      Image       -35.408187  2020-01-17T18:09:00Z        149.131098          PRESENT  2a78518b-7c0f-485b-be6b-61cc877cfd41  iNaturalist Australia  Eolophus roseicapilla         deborod  http://creativecommons.org/licenses/by-nc/4.0/  image/jpeg   1800    1200  https://images.ala.org.au/store/7/b/2/4/79e5ad3d-dfad-44f7-83ba-b576a91742b7/original
339  f7fbae15-aa1a-4010-9f11-88232588e59b  https://biodiversity.org.au/afd/taxa/9b4ad548-8bb3-486a-ab0a-905506c463ea     NaN     NaN      Image       -35.408187  2020-01-17T18:09:00Z        149.131098          PRESENT  2a78518b-7c0f-485b-be6b-61cc877cfd41  iNaturalist Australia  Eolophus roseicapilla         deborod  http://creativecommons.org/licenses/by-nc/4.0/  image/jpeg   1800    1200  https://images.ala.org.au/store/b/9/5/e/f7fbae15-aa1a-4010-9f11-88232588e59b/original

[340 rows x 18 columns]

To actually download the media files to your computer, add the argument collect. By default, it downloads the data to your current working directory, but you can specify the folder to download to with the path argument.

Configuring galah#

Various aspects of the galah package can be customized.

Email

To download occurrence records, you will need to provide an email address registered with the ALA. You can create an account here. Once an email is registered with the ALA, it should be stored in the config:

>>> galah.galah_config(email = "myemail@gmail.com")

Setting a download reason

ALA requires that you provide a reason when downloading occurrence data (via the galah.atlas_occurrences() function). The reason is set to 4 (scientific research) by default, but you can change this using galah_config(). See galah.show_all(reasons=True) for valid download reasons.

>>> galah.galah_config(reason = 5)

Debugging#

If things aren’t working as expected, more detail (particularly about web requests) can be obtained by setting the verbose option in many functions.